If I ever wondered before whether there really is a TFF hivemind, I don't anymore.
I've been thinking about a TFF webcomic for a while now.
The best way to do what you guys seem to want to do is to do two seperate webcomics.
For the one with a plot, I suggest following the evolution of the various TFF RPGs. To avoid the inevitable slide they had from cheerful school randoness (Academy) to interstellar war, start in the future, with someone narrating, and a few snapshots of the end game (TFFer POWs being killed, people dying in various manly and tragic ways etc.) and have the page end with the line "How did it come to this?"
From there, do the TFF Academy story, starting with a normal day in the school (Heh. Normal. :lol
and then zoom out to include more and more of Academy City.
Then do a few arcs about different TFF exploration teams (from the most recent RPG attempt, maybe Nanashi and NGD in the Nagasarete joke world, or Vex on planet *twitch*). And then start the Cerberus-ing, with the Yaoi bombardment on Academy City, and the Assault on Yaoi.
Just my rambling thoughts, but not a bad framework, I think.